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Job summary

Main area
Epidemic and Emerging Infections
Grade
Civil Service: Senior Executive Officer (SEO)
Contract
36 months (Fixed Term Appointment/Secondment/Loan until 31/03/2029)
Hours
  • Full time
  • Part time
  • Job share
  • Flexible working
37.5 hours per week
Job ref
919-JI-633004795-EXT
Employer
UK Health Security Agency
Employer type
Public (Non NHS)
Site
Core HQ
Town
Canary Wharf, London
Salary
£46,310 - £52,113 Per Annum, Pro Rata
Salary period
Yearly
Closing
07/10/2026 23:59

Employer heading

UK Health Security Agency logo

Senior Scientist (Epidemiology)

Civil Service: Senior Executive Officer (SEO)

The UK Health Security Agency (UKHSA) prevents, prepares for and responds to infectious diseases, and environmental hazards, to keep all our communities safe, save lives and protect livelihoods.

We provide scientific and operational leadership, working with local, national and international partners to protect the public’s health and build the nation’s health security capability.

UKHSA is an executive agency, sponsored by the Department of Health and Social Care.

Job overview

The Acute Respiratory Infections team is located within UKHSA’s TARZET division. The remit of the team includes providing specialist epidemiology and surveillance, coordinating the investigation of national outbreaks, advising government on the risks posed by various acute respiratory pathogens and responding to international health concerns.

The postholder will be a member of a team working on the surveillance, epidemiology and investigation of acute respiratory infections. Functions of the team include development of analysis and reporting functions for the mSCAPE programme to use metagenomic data for public health surveillance; development of new and reactive analysis methods for emerging pathogens and supporting the investigation and management of major national outbreaks, and collaborative working with epidemiology, modelling and academic partners. 

They will also work in an integrated way with other teams, such as the Genomics Public Health Analysis team (GPHA), in the TARZET division within the Emerging and Epidemic Infections Directorate.

Main duties of the job

  • The post is within the metagenomics surveillance section of the Acute Respiratory Infections team. The primary function of this post is to coordinate and develop the collation and epidemiological analysis of acute respiratory infection surveillance datasets derived from metagenomic sequencing.
  • The post holder will regularly conduct epidemiological analyses to monitor trends, geographic distribution and risk factors and supervise junior scientific staff to collate, manage and validate surveillance datasets. They will lead on and contribute to the delivery of surveillance and policy reports and to peer-reviewed publications.
  • The post-holder will adopt a variety of public health and surveillance portfolios, develop and implement standardised data collection and analysis protocols, will identify data quality issues and will facilitate their resolution. They will ensure that data are collected and processed in accordance with relevant policies and standard operating procedures (SOPs) and will undertake regular assessments of data quality and completeness. 

Continues below

Working for our organisation

We pride ourselves as being an employer of choice, where Everyone Matters promoting equality of opportunity to actively encourage applications from everyone, including groups currently underrepresented in our workforce.   

UKHSA ethos is to be an inclusive organisation for all our staff and stakeholders. To create, nurture and sustain an inclusive culture, where differences drive innovative solutions to meet the needs of our workforce and wider communities. We do this through celebrating and protecting differences by removing barriers and promoting equity and equality of opportunity for all.  

Please visit our careers site for more information https://gov.uk/ukhsa/careers

Detailed job description and main responsibilities

Surveillance

  • Develop, manage and maintain the mSCAPE pathogen surveillance databases.
  • Manage existing national surveillance systems and co-ordinate the development of new metagenomic surveillance systems for acute respiratory and to supervise and advise junior scientific and administrative staff in the maintenance and development of integrated or enhanced surveillance datasets.
  • Conduct complex statistical analyses of metagenomic and other pathogen data, as required, drawn from a variety of surveillance sources.
  • Advise scientific and administrative staff conducting routine analyses of surveillance datasets for standardised outputs and ad hoc enquiries.
  • Supervise junior scientific colleagues and the administrative team in the production of surveillance reports and publications.
  • Help coordinate the activities of scientists in partner institutes involved in collaborative surveillance programmes.
  • Provide technical advice and assistance to public health practitioners on the design, maintenance, analysis and interpretation of surveillance databases.
  • Develop methodologies to ensure emerging threats are recognized in a timely manner by the analysis and interpretation of often complex data from a variety of sources to understand the public health significance of the potential risk.

Outbreak Investigation

Manage the technical and analytical aspects of outbreak investigations, under the supervision of the epidemiology lead, by:

  • Liaising with relevant specialists to collect epidemiological data
  • Coordinating and advising incident teams
  • Overseeing data entry and ensuring quality control of databases
  • Collating and interpreting genome-derived epidemiological and microbiological data drawn from a variety of sources
  • Providing statistical and phylogenetic analyses for government agencies, health protection units and environmental health departments
  • Writing briefing notes and situation reports
  • Presenting epidemiological data to Incident Management Teams
  • Contributing to the production of outbreak reports and subsequent publications

Research

  • Contribute to the development of research proposals
  • Coordinate the collection and collation of data from collaborators based in specialist laboratories and other institutions throughout the UK.
  • Conduct statistical analyses of epidemiological and microbiological data for grant funded research projects and UKHSA programmes.
  • Provide complex statistical analyses of metagenomics surveillance/research datasets to academic units and other agencies involved in collaborative epidemiological, microbiological and veterinary research studies under the guidance of the project leader.
  • Contribute to the process of writing scientific papers for publication in peer reviewed journals and project reports to funding bodies.

Publications and presentations

  • Write or contribute to the drafting of scientific papers for publication in peer reviewed journals and detailed reports for UKHSA or Government departments.
  • Supervise scientific and administrative staff in the production of departmental web outputs
  • Present epidemiological findings at national and international meetings and conferences.

Teaching and Training

  • Develop and present lectures and teaching materials on the epidemiology and surveillance of acute respiratory infections for UKHSA, university postgraduate and professional development training programmes.
  • Contribute to the training for new members of staff on the epidemiology and surveillance of acute respiratory infections.
  • Line management of junior scientific staff.

This list is not exhaustive

Essential Criteria

  • Degree in a life science, data science, or related discipline, with postgraduate study or experience in public health, genomic epidemiology, microbial genomics, or a related field.
  • Experience interpreting, analysing, and evaluating genomic and epidemiological data using tools such as R or Python.
  • Ability to analyse, synthesise, and interpret complex information from multiple and sometimes conflicting sources to support decision-making.
  • Strong scientific writing skills, including preparation of scientific publications, technical reports, and project documentation.
  • Excellent verbal and written communication skills, with the ability to explain complex ideas and methods clearly to a range of audiences.
  • Proven ability to work independently and collaboratively, managing multiple priorities, solving practical problems, and delivering work to agreed deadlines.
  • Demonstrated sound judgement, including the ability to make informed decisions from incomplete information, alongside a commitment to equality, inclusion, and positive working relationships.

Desirable Criteria

  • Statistical analysis of large and complex epidemiological datasets.
  • Experience of managing technical aspects of outbreak investigation.
  • Knowledge of Next Generation Sequencing technologies and associated bioinformatics analytical approaches.
  • Knowledge of metagenomics.
  • Having a thorough understanding of recent advances in the epidemiology and microbiology of respiratory infections and presenting scientific papers at national and international conferences.
  • Experience of creating and giving presentations to a varied group of internal and external stakeholders and an ability to liaise with a range of health professionals and scientific specialists.

Selection Process Details 

This vacancy is using Success Profiles and will assess your Behaviours, Strengths, Ability, Experience and Technical skills. 

Stage 1: Application & Sift   

Success Profiles - GOV.UK  

You will be required to complete an application form. You will be assessed on the listed 7 essential criteria, and this will be in the form of a:   

  • Application form (‘Employer/ Activity history’ section on the application)  
  • 1500 word supporting statement.   

This should outline how you consider your skills, experience and knowledge provide evidence of your suitability for the role, with reference to the essential criteria.   
  
You will receive a joint score for your application form and statement. (The application form is the kind of information you would put into your C.V –please be advised you will not be able to upload your CV. Please complete the application form in as much detail as possible). Please do not email us your CV. 

Healthjobs UK has a word limit of 1500, but your supporting statement must be no more than 1500 words. We will not consider any words over 1500 words. 

Longlisting:  
 
In the event of a large number of applications we will longlist into 3 piles of: 

  • Meets all essential criteria   
  • Meets some essential criteria   
  • Meets no essential criteria 

If used, the pile(s) that meets ALL essential criteria’ will proceed to shortlisting.   

Shortlisting:  

In the event of a large number of applications we may conduct an initial sift, on the lead criteria of:

  • Degree in a life science, data science, or related discipline, with postgraduate study or experience in public health, genomic epidemiology, microbial genomics, or a related field.
  • Experience interpreting, analysing, and evaluating genomic and epidemiological data using tools such as R or Python.

Desirable criteria may be used in the event of a large number of applications/large amount of successful candidates.  

If you are successful at this stage, you will progress to interview.  

Feedback will not be provided at this stage.  

Stage 2: Interview  

Success profiles Success Profiles - GOV.UK  

You will be invited to a single remote interview.

Behaviours, Strengths, Ability and Technical skills will be tested at interview in the form of questions and a presentation.

There will be a 5-minute presentation on metagenomic data analysis.

The Behaviours tested during the interview stage will be: 

  • Lead behaviour - Delivering at Pace
  • Communicating and Influencing
  • Changing and Improving
  • Making Effective Decisions

Interview dates are to be confirmed. 

Once this job has closed, the job advert will no longer be available. You may want to save a copy for your records.

Eligibility Criteria 

External - This vacancy is open to all external applicants (anyone) from outside the Civil Service as well as internal applicants.

Location

This role is being offered as hybrid working based at our core HQ in Canary Wharf, London. We offer great flexible working opportunities at UKHSA and operate using a hybrid working model where business needs allow. This provides us with greater flexibility about how and where we work, to get the best from our workforce. As a hybrid worker, you will be expected to spend a minimum of 60% of your contractual working hours (approximately 3 days a week pro rata, averaged over a month) working at our office. Our core HQ offices are modern and newly refurbished with excellent city centre transport links and benefit from co-location with other government departments such as the Department for Health and Social Care (DHSC).

Security Clearance Level Requirement 

Successful candidates must pass a basic disclosure and barring security check before they can be appointed.

Successful candidates must meet the security requirements before they can be appointed. The level of security needed is Baseline Personnel Security Standard

Salary Information

If you are successful at interview, and are moving from another government department, NHS, or Local Authority, the relevant starting salary principles for level transfers or promotions will apply. Otherwise, roles are offered at the pay scale minimum for the grade, but in exceptional circumstances there may be flexibility if you are able to demonstrate you are already in receipt of an existing, higher salary. Pay increases are through the relevant annual pay award for the role and terms. Please be aware that the salary is based on the office location.

Person specification

Application form and supporting statement

Essential criteria
  • Application form and supporting statement

Interview - Behaviours

Essential criteria
  • Delivering at Pace
  • Communicating and Influencing
  • Changing and Improving
  • Making Effective Decisions

Interview

Essential criteria
  • Presentation

Employer certification / accreditation badges

Purple SpaceApprenticeships logoNo smoking policyAge positiveImproving working livesMindful employer.  Being positive about mental health.Disability confident employerThe Employers Network for Equality & Inclusion (enei) is the UK's leading employer network covering all aspects of equality and inclusion issues in the workplace.Carer Confident -AccomplishedHappy to Talk Flexible Working

Applicant requirements

The postholder will have access to vulnerable people in the course of their normal duties and as such this post is subject to the Rehabilitation of Offenders Act 1974 (Exceptions) Order 1975 (Amendment) (England and Wales) Order 2020 and as such it will be necessary for a submission for Disclosure to be made to the Disclosure and Barring Service to check for any previous criminal convictions.

Documents to download

Apply online now

Further details / informal visits contact

Name
John Inglis
Job title
Resourcing Officer
Email address
[email protected]
Additional information

If you need to ask any questions relating to this vacancy, you can also email [email protected]

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